COBIOS: Engineering and Control of Biological Systems: A New Way to Tackle Complex Diseases and Biotechnological Innovation (2007-2009), NEST-2005-2 PATHFINDER.

EC-MOAN: Scalable Modeling and Analysis Techniques to Study Emergent Cell Behavior; Understanding the E. coli Stress Response (2007-2009), NEST-2005-2 PATHFINDER.

MetaGenoReg: Towards an Understanding of the Interrelations between Metabolic and Gene Regulation: E. coli Carbon Metabolism as a Test Case (2006-2009), ANR Biologie systémique (BIOSYS).

Hygeia: Hybrid Systems for Biochemical Network Modeling and Analysis (2005-2007), NEST-2003-1 ADVENTURE.